IL_3JBN_009

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

3JBN|1|A|A|116, 3JBN|1|A|G|117

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_009 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.1491

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

3JBN|1|A|U|115
3JBN|1|A|A|116
3JBN|1|A|G|117
3JBN|1|A|U|118
*
3JBN|1|A|A|306
3JBN|1|A|G|307

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain L

40S ribosomal protein eS8

Chain V

40S ribosomal protein uS17