IL_3JBN_017

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_017 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1244

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

3JBN|1|A|G|395
3JBN|1|A|G|396
3JBN|1|A|A|397
*
3JBN|1|A|U|412
3JBN|1|A|A|413
3JBN|1|A|C|414

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein eS6

Chain L

40S ribosomal protein eS8