IL_3JBN_033
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAGUAAAUU*ACUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 3JBN|1|A|U|858
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_033 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.4149
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
3JBN|1|A|G|801
3JBN|1|A|A|802
3JBN|1|A|G|803
3JBN|1|A|U|804
3JBN|1|A|A|805
3JBN|1|A|A|806
3JBN|1|A|A|807
3JBN|1|A|U|808
3JBN|1|A|U|809
*
3JBN|1|A|A|854
3JBN|1|A|C|855
3JBN|1|A|U|856
3JBN|1|A|A|857
3JBN|1|A|U|858
3JBN|1|A|A|859
3JBN|1|A|G|860
3JBN|1|A|C|861
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS4
- Chain F
- 40S ribosomal protein eS4
- Chain K
- 40S ribosomal protein uS8
- Chain V
- 40S ribosomal protein uS17
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