IL_3JBN_051

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

3JBN|1|A|A|1928

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_051 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1214

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3JBN|1|A|G|1247
3JBN|1|A|A|1248
*
3JBN|1|A|U|1927
3JBN|1|A|A|1928
3JBN|1|A|C|1929

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein eS26

Chain Ag

60S ribosomal protein eL41

Chain G

40S ribosomal protein uS5