IL_3JBN_089

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_089 not in the Motif Atlas

Homologous match to IL_8C3A_008

Geometric discrepancy: 0.2128

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JBN|1|AA|C|126
3JBN|1|AA|U|127
3JBN|1|AA|U|128
*
3JBN|1|AA|A|149
3JBN|1|AA|C|150
3JBN|1|AA|G|151

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AJ

60S ribosomal protein eL8

Chain AP

60S ribosomal protein eL15

Chain AY

60S ribosomal protein uL23