IL_3JBN_094
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUUUGA*UCUUUU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_094 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3869
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JBN|1|AA|A|186
3JBN|1|AA|U|187
3JBN|1|AA|U|188
3JBN|1|AA|U|189
3JBN|1|AA|G|190
3JBN|1|AA|A|191
*
3JBN|1|AA|U|240
3JBN|1|AA|C|241
3JBN|1|AA|U|242
3JBN|1|AA|U|243
3JBN|1|AA|U|244
3JBN|1|AA|U|245
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL
- 60S ribosomal protein eL13
- Chain AZ
- 60S ribosomal protein uL24
- Chain Ac
- 60S ribosomal protein eL37
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