IL_3JBN_097

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAC*GCAAUUAAAUAGUAC

Length

19 nucleotides

Bulged bases

3JBN|1|AA|C|400, 3JBN|1|AA|U|408, 3JBN|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|G|385
3JBN|1|AA|U|386
3JBN|1|AA|A|387
3JBN|1|AA|C|388
*
3JBN|1|AA|G|399
3JBN|1|AA|C|400
3JBN|1|AA|A|401
3JBN|1|AA|A|402
3JBN|1|AA|U|403
3JBN|1|AA|U|404
3JBN|1|AA|A|405
3JBN|1|AA|A|406
3JBN|1|AA|A|407
3JBN|1|AA|U|408
3JBN|1|AA|A|409
3JBN|1|AA|G|410
3JBN|1|AA|U|411
3JBN|1|AA|A|412
3JBN|1|AA|C|413

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AW

60S ribosomal protein uL22

Chain AZ

60S ribosomal protein uL24

Chain Ae

60S ribosomal protein eL39