IL_3JBN_105

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUCU*AA

Length

6 nucleotides

Bulged bases

3JBN|1|AA|C|585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_105 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.3673

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

3JBN|1|AA|U|583
3JBN|1|AA|U|584
3JBN|1|AA|C|585
3JBN|1|AA|U|586
*
3JBN|1|AA|A|605
3JBN|1|AA|A|606

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein eL14

Chain AU

60S ribosomal protein eL20