IL_3JBN_108

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_108 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2048

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JBN|1|AA|A|743
3JBN|1|AA|G|744
3JBN|1|AA|C|745
*
3JBN|1|AA|G|914
3JBN|1|AA|G|915
3JBN|1|AA|U|916

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein uL4

Chain AL

60S ribosomal protein eL13

Chain AO

60S ribosomal protein uL15

Chain AP

60S ribosomal protein eL15

Chain AS

60S ribosomal protein eL18