IL_3JBN_112

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAA*UUUA

Length

7 nucleotides

Bulged bases

3JBN|1|AA|U|893

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_112 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.3794

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JBN|1|AA|U|879
3JBN|1|AA|A|880
3JBN|1|AA|A|881
*
3JBN|1|AA|U|892
3JBN|1|AA|U|893
3JBN|1|AA|U|894
3JBN|1|AA|A|895

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain Ai

60S ribosomal protein eL44