IL_3JBN_116

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

3JBN|1|AA|G|979

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_116 not in the Motif Atlas

Homologous match to IL_5TBW_029

Geometric discrepancy: 0.1478

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3JBN|1|AA|U|952
3JBN|1|AA|U|953
*
3JBN|1|AA|G|978
3JBN|1|AA|G|979
3JBN|1|AA|A|980

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Ah

60S ribosomal protein eL43