IL_3JBN_122

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAUUAAUAU*AAAAUA

Length

16 nucleotides

Bulged bases

3JBN|1|AA|U|1099, 3JBN|1|AA|A|1100, 3JBN|1|AA|A|1229, 3JBN|1|AA|U|1232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|U|1095
3JBN|1|AA|G|1096
3JBN|1|AA|A|1097
3JBN|1|AA|U|1098
3JBN|1|AA|U|1099
3JBN|1|AA|A|1100
3JBN|1|AA|A|1101
3JBN|1|AA|U|1102
3JBN|1|AA|A|1103
3JBN|1|AA|U|1104
*
3JBN|1|AA|A|1228
3JBN|1|AA|A|1229
3JBN|1|AA|A|1230
3JBN|1|AA|A|1231
3JBN|1|AA|U|1232
3JBN|1|AA|A|1233

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain A5

60S ribosomal protein uL30

Chain AS

60S ribosomal protein eL18

Chain AV

60S ribosomal protein eL21