IL_3JBN_127

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_127 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1828

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

3JBN|1|AA|A|1128
3JBN|1|AA|U|1129
3JBN|1|AA|U|1130
3JBN|1|AA|A|1131
*
3JBN|1|AA|U|1164
3JBN|1|AA|U|1165
3JBN|1|AA|C|1166
3JBN|1|AA|U|1167

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

60S ribosomal protein uL16

Chain AR

60S ribosomal protein uL18