IL_3JBN_135
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 3JBN|1|AA|U|1309
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_135 not in the Motif Atlas
- Geometric match to IL_5TBW_050
- Geometric discrepancy: 0.1824
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
3JBN|1|AA|A|1308
3JBN|1|AA|U|1309
3JBN|1|AA|A|1310
*
3JBN|1|AA|U|1452
3JBN|1|AA|U|1453
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain A9
- 60S ribosomal protein eL33
- Chain AK
- 60S ribosomal protein uL13
- Chain AN
- 60S ribosomal protein eL14
- Chain AU
- 60S ribosomal protein eL20
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