IL_3JBN_157
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUAA*UAUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_157 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2808
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
3JBN|1|AA|G|1973
3JBN|1|AA|U|1974
3JBN|1|AA|A|1975
3JBN|1|AA|A|1976
*
3JBN|1|AA|U|1992
3JBN|1|AA|A|1993
3JBN|1|AA|U|1994
3JBN|1|AA|C|1995
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AT
- 60S ribosomal protein eL19
- Chain AX
- 60S ribosomal protein eL22
- Chain Aa
- 60S ribosomal protein eL34
- Chain Ad
- 60S ribosomal protein eL38
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