IL_3JBN_161

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_161 not in the Motif Atlas

Homologous match to IL_5TBW_075

Geometric discrepancy: 0.1359

The information below is about IL_5TBW_075

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

3JBN|1|AA|A|2163
3JBN|1|AA|A|2164
3JBN|1|AA|G|2165
*
3JBN|1|AA|C|2631
3JBN|1|AA|C|2632
3JBN|1|AA|U|2633

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain AE

60S ribosomal protein uL3

Chain AM

60S ribosomal protein uL14