IL_3JBN_174

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_174 not in the Motif Atlas

Homologous match to IL_5TBW_089

Geometric discrepancy: 0.1348

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

3JBN|1|AA|G|2569
3JBN|1|AA|C|2570
*
3JBN|1|AA|G|2600
3JBN|1|AA|C|2601
3JBN|1|AA|A|2602
3JBN|1|AA|U|2603

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain Ag

60S ribosomal protein eL41