IL_3JBN_177

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

3JBN|1|AA|A|2690, 3JBN|1|AA|C|3342

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_177 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.155

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JBN|1|AA|G|2689
3JBN|1|AA|A|2690
3JBN|1|AA|A|2691
*
3JBN|1|AA|U|3340
3JBN|1|AA|A|3341
3JBN|1|AA|C|3342
3JBN|1|AA|C|3343

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3