IL_3JBN_178

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

3JBN|1|AA|U|2703

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_178 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.1939

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3JBN|1|AA|G|2702
3JBN|1|AA|U|2703
3JBN|1|AA|U|2704
*
3JBN|1|AA|A|3170
3JBN|1|AA|C|3171

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AF

60S ribosomal protein uL4

Chain AO

60S ribosomal protein uL15