IL_3JBN_192

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_192 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.2539

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3JBN|1|AA|C|3194
3JBN|1|AA|C|3195
3JBN|1|AA|A|3196
3JBN|1|AA|A|3197
3JBN|1|AA|G|3198
*
3JBN|1|AA|C|3208
3JBN|1|AA|G|3209
3JBN|1|AA|A|3210
3JBN|1|AA|C|3211
3JBN|1|AA|G|3212

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein uL16

Chain Af

60S ribosomal protein eL40