IL_3JBN_195

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

3JBN|1|AA|A|3300, 3JBN|1|AA|C|3301

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_195 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1638

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JBN|1|AA|C|3240
3JBN|1|AA|U|3241
*
3JBN|1|AA|A|3299
3JBN|1|AA|A|3300
3JBN|1|AA|C|3301
3JBN|1|AA|G|3302

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AK

60S ribosomal protein uL13

Chain AM

60S ribosomal protein uL14