IL_3JBO_001

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

3JBO|1|A|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_001 not in the Motif Atlas

Geometric match to IL_7KGA_004

Geometric discrepancy: 0.2691

The information below is about IL_7KGA_004

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

3JBO|1|A|U|24
3JBO|1|A|C|25
3JBO|1|A|A|26
*
3JBO|1|A|U|607
3JBO|1|A|A|608

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS4

Chain Q

40S ribosomal protein uS12