IL_3JBO_017

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_017 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1338

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

3JBO|1|A|C|417
3JBO|1|A|A|418
3JBO|1|A|U|419
*
3JBO|1|A|A|426
3JBO|1|A|A|427
3JBO|1|A|G|428

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein uL14

Chain H

40S ribosomal protein eS6