IL_3JBO_022

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

3JBO|1|A|U|565

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_022 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.1207

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

3JBO|1|A|G|564
3JBO|1|A|U|565
3JBO|1|A|C|566
*
3JBO|1|A|G|593
3JBO|1|A|C|594

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein eS30

Chain D

40S ribosomal protein uS3

Chain E

40S ribosomal protein uS4