IL_3JBO_027

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_027 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1472

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JBO|1|A|G|651
3JBO|1|A|A|652
3JBO|1|A|A|653
*
3JBO|1|A|U|747
3JBO|1|A|C|748
3JBO|1|A|U|749

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein eS7

Chain K

40S ribosomal protein uS8