IL_3JBO_034

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_034 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.2356

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3JBO|1|A|C|881
3JBO|1|A|A|882
3JBO|1|A|A|883
*
3JBO|1|A|U|919
3JBO|1|A|A|920
3JBO|1|A|G|921

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain J

40S ribosomal protein eS7