IL_3JBO_038
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_038 not in the Motif Atlas
- Geometric match to IL_4V88_428
- Geometric discrepancy: 0.2101
- The information below is about IL_4V88_428
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
3JBO|1|A|A|933
3JBO|1|A|G|934
*
3JBO|1|A|C|1031
3JBO|1|A|A|1032
3JBO|1|A|U|1033
3JBO|1|A|U|1034
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein eS27
- Chain K
- 40S ribosomal protein uS8
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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