IL_3JBO_038

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_038 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.2101

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

3JBO|1|A|A|933
3JBO|1|A|G|934
*
3JBO|1|A|C|1031
3JBO|1|A|A|1032
3JBO|1|A|U|1033
3JBO|1|A|U|1034

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein eS27

Chain K

40S ribosomal protein uS8

Chain U

40S ribosomal protein uS15

Chain V

40S ribosomal protein uS17