IL_3JBO_063

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGGAUA*UUGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_063 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1223

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JBO|1|A|G|1837
3JBO|1|A|G|1838
3JBO|1|A|G|1839
3JBO|1|A|A|1840
3JBO|1|A|U|1841
3JBO|1|A|A|1842
*
3JBO|1|A|U|1863
3JBO|1|A|U|1864
3JBO|1|A|G|1865
3JBO|1|A|A|1866
3JBO|1|A|A|1867
3JBO|1|A|C|1868

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein uS7

Chain S

40S ribosomal protein uS13

Chain Y

40S ribosomal protein eS19