IL_3JBO_077

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAG*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_077 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1928

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3JBO|1|A|C|1979
3JBO|1|A|A|1980
3JBO|1|A|A|1981
3JBO|1|A|G|1982
*
3JBO|1|A|U|2008
3JBO|1|A|C|2009
3JBO|1|A|U|2010
3JBO|1|A|G|2011

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein eS6

Chain L

40S ribosomal protein eS8