IL_3JBO_079

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

3JBO|1|AA|U|14

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_079 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.256

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3JBO|1|AA|G|13
3JBO|1|AA|U|14
3JBO|1|AA|U|15
*
3JBO|1|AC|A|151
3JBO|1|AC|C|152

Current chains

Chain AA

28S ribosomal RNA

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein eL8

Chain AP

60S ribosomal protein eL15

Chain AY

60S ribosomal protein uL23