IL_3JBO_080
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCGAAUUU*AUAAUUAAG
- Length
- 17 nucleotides
- Bulged bases
- 3JBO|1|AA|U|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_080 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.1191
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JBO|1|AA|C|31
3JBO|1|AA|C|32
3JBO|1|AA|G|33
3JBO|1|AA|A|34
3JBO|1|AA|A|35
3JBO|1|AA|U|36
3JBO|1|AA|U|37
3JBO|1|AA|U|38
*
3JBO|1|AA|A|45
3JBO|1|AA|U|46
3JBO|1|AA|A|47
3JBO|1|AA|A|48
3JBO|1|AA|U|49
3JBO|1|AA|U|50
3JBO|1|AA|A|51
3JBO|1|AA|A|52
3JBO|1|AA|G|53
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ai
- 60S ribosomal protein eL44
Coloring options: