IL_3JBO_082
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGUUAA*UC
- Length
- 8 nucleotides
- Bulged bases
- 3JBO|1|AA|G|119, 3JBO|1|AA|U|120, 3JBO|1|AA|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_082 not in the Motif Atlas
- Geometric match to IL_5J7L_005
- Geometric discrepancy: 0.0748
- The information below is about IL_5J7L_005
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
3JBO|1|AA|G|118
3JBO|1|AA|G|119
3JBO|1|AA|U|120
3JBO|1|AA|U|121
3JBO|1|AA|A|122
3JBO|1|AA|A|123
*
3JBO|1|AA|U|158
3JBO|1|AA|C|159
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein uL29
- Chain AJ
- 60S ribosomal protein eL8
- Chain AP
- 60S ribosomal protein eL15
- Chain Ab
- 60S ribosomal protein eL36
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