IL_3JBO_085

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUUUG*CUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_085 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3539

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JBO|1|AA|G|130
3JBO|1|AA|U|131
3JBO|1|AA|U|132
3JBO|1|AA|U|133
3JBO|1|AA|G|134
*
3JBO|1|AA|C|143
3JBO|1|AA|U|144
3JBO|1|AA|U|145
3JBO|1|AA|U|146
3JBO|1|AA|C|147

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AY

60S ribosomal protein uL23