IL_3JBO_092

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAC*GCAAUUAAAUAGUAC

Length

19 nucleotides

Bulged bases

3JBO|1|AA|C|400, 3JBO|1|AA|U|408, 3JBO|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|G|385
3JBO|1|AA|U|386
3JBO|1|AA|A|387
3JBO|1|AA|C|388
*
3JBO|1|AA|G|399
3JBO|1|AA|C|400
3JBO|1|AA|A|401
3JBO|1|AA|A|402
3JBO|1|AA|U|403
3JBO|1|AA|U|404
3JBO|1|AA|A|405
3JBO|1|AA|A|406
3JBO|1|AA|A|407
3JBO|1|AA|U|408
3JBO|1|AA|A|409
3JBO|1|AA|G|410
3JBO|1|AA|U|411
3JBO|1|AA|A|412
3JBO|1|AA|C|413

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AW

60S ribosomal protein uL22

Chain AZ

60S ribosomal protein uL24

Chain Ae

60S ribosomal protein eL39