IL_3JBO_093
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CUGAAAU*AUGGAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_093 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.0873
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
3JBO|1|AA|C|414
3JBO|1|AA|U|415
3JBO|1|AA|G|416
3JBO|1|AA|A|417
3JBO|1|AA|A|418
3JBO|1|AA|A|419
3JBO|1|AA|U|420
*
3JBO|1|AC|A|17
3JBO|1|AC|U|18
3JBO|1|AC|G|19
3JBO|1|AC|G|20
3JBO|1|AC|A|21
3JBO|1|AC|U|22
3JBO|1|AC|G|23
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A8
- 60S ribosomal protein eL32
- Chain AF
- 60S ribosomal protein uL4
- Chain AW
- 60S ribosomal protein uL22
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