IL_3JBO_105

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

3JBO|1|AA|A|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_105 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.4652

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3JBO|1|AA|C|875
3JBO|1|AA|C|876
*
3JBO|1|AA|G|898
3JBO|1|AA|A|899
3JBO|1|AA|G|900

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AO

60S ribosomal protein uL15

Chain AS

60S ribosomal protein eL18