IL_3JBO_106
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UAA*UUUA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_106 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.3569
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
3JBO|1|AA|U|879
3JBO|1|AA|A|880
3JBO|1|AA|A|881
*
3JBO|1|AA|U|892
3JBO|1|AA|U|893
3JBO|1|AA|U|894
3JBO|1|AA|A|895
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein eL29
- Chain AO
- 60S ribosomal protein uL15
- Chain AS
- 60S ribosomal protein eL18
- Chain Ai
- 60S ribosomal protein eL44
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