IL_3JBO_109

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

3JBO|1|AA|A|1015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_109 not in the Motif Atlas

Homologous match to IL_8C3A_031

Geometric discrepancy: 0.1302

The information below is about IL_8C3A_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3JBO|1|AA|U|947
3JBO|1|AA|G|948
*
3JBO|1|AA|C|1014
3JBO|1|AA|A|1015
3JBO|1|AA|A|1016

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain Aa

60S ribosomal protein eL34

Chain Ah

60S ribosomal protein eL43