IL_3JBO_117

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

3JBO|1|AA|A|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_117 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.2616

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3JBO|1|AA|A|1105
3JBO|1|AA|A|1106
3JBO|1|AA|U|1107
*
3JBO|1|AA|A|1226
3JBO|1|AA|U|1227

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain A5

60S ribosomal protein uL30

Chain AS

60S ribosomal protein eL18

Chain AV

60S ribosomal protein eL21