IL_3JBO_132

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3JBO|1|AA|U|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_132 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.193

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3JBO|1|AA|G|1335
3JBO|1|AA|U|1336
3JBO|1|AA|G|1337
*
3JBO|1|AA|C|1424
3JBO|1|AA|C|1425

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AU

60S ribosomal protein eL20

Chain Af

60S ribosomal protein eL40