IL_3JBO_151

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAA*UAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_151 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3079

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JBO|1|AA|G|1973
3JBO|1|AA|U|1974
3JBO|1|AA|A|1975
3JBO|1|AA|A|1976
*
3JBO|1|AA|U|1992
3JBO|1|AA|A|1993
3JBO|1|AA|U|1994
3JBO|1|AA|C|1995

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AX

60S ribosomal protein eL22

Chain Aa

60S ribosomal protein eL34

Chain Ad

60S ribosomal protein eL38