IL_3JBO_153

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUUUG*CUUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_153 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3483

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3JBO|1|AA|C|2036
3JBO|1|AA|U|2037
3JBO|1|AA|U|2038
3JBO|1|AA|U|2039
3JBO|1|AA|G|2040
*
3JBO|1|AA|C|2069
3JBO|1|AA|U|2070
3JBO|1|AA|U|2071
3JBO|1|AA|U|2072
3JBO|1|AA|G|2073

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A1

60S ribosomal protein eL27