IL_3JBO_154

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AAAAAA*UAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_154 not in the Motif Atlas

Geometric match to IL_7RQB_064

Geometric discrepancy: 0.2467

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3JBO|1|AA|A|2151
3JBO|1|AA|A|2152
3JBO|1|AA|A|2153
3JBO|1|AA|A|2154
3JBO|1|AA|A|2155
3JBO|1|AA|A|2156
*
3JBO|1|AA|U|2640
3JBO|1|AA|A|2641
3JBO|1|AA|U|2642

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3

Chain AW

60S ribosomal protein uL22