IL_3JBO_156

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_156 not in the Motif Atlas

Homologous match to IL_5TBW_076

Geometric discrepancy: 0.1754

The information below is about IL_5TBW_076

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

3JBO|1|AA|G|2166
3JBO|1|AA|G|2167
3JBO|1|AA|A|2168
3JBO|1|AA|A|2169
*
3JBO|1|AA|U|2629
3JBO|1|AA|C|2630

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AM

60S ribosomal protein uL14