IL_3JBO_161

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

3JBO|1|AA|A|2617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_161 not in the Motif Atlas

Homologous match to IL_5TBW_082

Geometric discrepancy: 0.2396

The information below is about IL_5TBW_082

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3JBO|1|AA|C|2421
3JBO|1|AA|C|2422
*
3JBO|1|AA|G|2616
3JBO|1|AA|A|2617
3JBO|1|AA|G|2618

Current chains

Chain AA

28S ribosomal RNA

Nearby chains