IL_3JBO_165

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_165 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2082

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

3JBO|1|AA|U|2497
3JBO|1|AA|U|2498
3JBO|1|AA|G|2499
*
3JBO|1|AA|C|2530
3JBO|1|AA|A|2531

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AD

60S ribosomal protein uL2