IL_3JBO_180

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAAAUGACG*CUACUGUG

Length

18 nucleotides

Bulged bases

3JBO|1|AA|A|3116, 3JBO|1|AA|C|3123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|C|3115
3JBO|1|AA|A|3116
3JBO|1|AA|A|3117
3JBO|1|AA|A|3118
3JBO|1|AA|A|3119
3JBO|1|AA|U|3120
3JBO|1|AA|G|3121
3JBO|1|AA|A|3122
3JBO|1|AA|C|3123
3JBO|1|AA|G|3124
*
3JBO|1|AA|C|3136
3JBO|1|AA|U|3137
3JBO|1|AA|A|3138
3JBO|1|AA|C|3139
3JBO|1|AA|U|3140
3JBO|1|AA|G|3141
3JBO|1|AA|U|3142
3JBO|1|AA|G|3143

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein eL13

Chain AO

60S ribosomal protein uL15

Chain AS

60S ribosomal protein eL18

Chain Ab

60S ribosomal protein eL36

Chain Ai

60S ribosomal protein eL44