IL_3JBO_185

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_185 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.2041

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3JBO|1|AA|C|3194
3JBO|1|AA|C|3195
3JBO|1|AA|A|3196
3JBO|1|AA|A|3197
3JBO|1|AA|G|3198
*
3JBO|1|AA|C|3208
3JBO|1|AA|G|3209
3JBO|1|AA|A|3210
3JBO|1|AA|C|3211
3JBO|1|AA|G|3212

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein uL16

Chain Af

60S ribosomal protein eL40