IL_3JBO_198

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

3JBO|1|AA|G|3463, 3JBO|1|AA|U|3464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_198 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2648

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

3JBO|1|AA|U|3448
3JBO|1|AA|U|3449
*
3JBO|1|AA|A|3462
3JBO|1|AA|G|3463
3JBO|1|AA|U|3464
3JBO|1|AA|G|3465

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AT

60S ribosomal protein eL19