IL_3JBO_201

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

3JBO|1|AA|A|3581

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_201 not in the Motif Atlas

Geometric match to IL_7A0S_012

Geometric discrepancy: 0.231

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3JBO|1|AA|G|3580
3JBO|1|AA|A|3581
3JBO|1|AA|G|3582
*
3JBO|1|AA|C|3620
3JBO|1|AA|C|3621

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A9

60S ribosomal protein eL33

Chain AI

60S ribosomal protein eL6

Chain AK

60S ribosomal protein uL13

Chain AN

60S ribosomal protein eL14

Chain AU

60S ribosomal protein eL20